HL_6HTQ_053

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6HTQ|1|A|A|2297, 6HTQ|1|A|C|2304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HTQ_053 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1908

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6HTQ|1|A|C|2293
6HTQ|1|A|U|2294
6HTQ|1|A|A|2295
6HTQ|1|A|A|2296
6HTQ|1|A|A|2297
6HTQ|1|A|A|2298
6HTQ|1|A|G|2299
6HTQ|1|A|G|2300
6HTQ|1|A|U|2301
6HTQ|1|A|A|2302
6HTQ|1|A|A|2303
6HTQ|1|A|C|2304
6HTQ|1|A|G|2305

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain V

50S ribosomal protein L27