HL_6HTQ_060

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

6HTQ|1|A|G|2558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HTQ_060 not in the Motif Atlas

Homologous match to HL_4WF9_057

Geometric discrepancy: 0.1482

The information below is about HL_4WF9_057

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6HTQ|1|A|U|2557
6HTQ|1|A|G|2558
6HTQ|1|A|U|2559
6HTQ|1|A|A|2560
6HTQ|1|A|G|2561
6HTQ|1|A|U|2562
6HTQ|1|A|C|2563
6HTQ|1|A|G|2564

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L36

Chain G

50S ribosomal protein L6