HL_6HTQ_065

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6HTQ|1|A|G|2780, 6HTQ|1|A|C|2784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HTQ_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.2287

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6HTQ|1|A|C|2774
6HTQ|1|A|U|2775
6HTQ|1|A|G|2776
6HTQ|1|A|A|2777
6HTQ|1|A|A|2778
6HTQ|1|A|A|2779
6HTQ|1|A|G|2780
6HTQ|1|A|C|2781
6HTQ|1|A|A|2782
6HTQ|1|A|U|2783
6HTQ|1|A|C|2784
6HTQ|1|A|U|2785
6HTQ|1|A|A|2786
6HTQ|1|A|A|2787
6HTQ|1|A|G|2788

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13