HL_6HTQ_078

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HTQ_078 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1873

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6HTQ|1|a|G|328
6HTQ|1|a|A|329
6HTQ|1|a|C|330
6HTQ|1|a|U|331
6HTQ|1|a|G|332
6HTQ|1|a|A|333
6HTQ|1|a|G|334
6HTQ|1|a|A|335
6HTQ|1|a|C|336
6HTQ|1|a|A|337
6HTQ|1|a|C|338
6HTQ|1|a|G|339
6HTQ|1|a|G|340
6HTQ|1|a|C|341

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20