HL_6I7O_012

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

6I7O|1|2|U|454, 6I7O|1|2|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_012 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.1481

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6I7O|1|2|U|450
6I7O|1|2|A|451
6I7O|1|2|A|452
6I7O|1|2|U|453
6I7O|1|2|U|454
6I7O|1|2|C|455
6I7O|1|2|A|456

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain d

40S ribosomal protein S24-A