HL_6I7O_015

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Missing nucleotides: 569, 570, 571, 572, 573, 574

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_015 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.0937

The information below is about HL_4V88_200

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_53845.3

Basepair signature

cWW-tSH

Number of instances in this motif group

9

Unit IDs

6I7O|1|2|C|569
6I7O|1|2|A|570
6I7O|1|2|G|571
6I7O|1|2|C|572
6I7O|1|2|C|573
6I7O|1|2|G|574

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S23-A