HL_6I7O_015
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CAGCCG
- Length
- 6 nucleotides
- Bulged bases (A, C, G, U)
- None detected
- QA status
- Missing nucleotides: 569, 570, 571, 572, 573, 574
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6I7O_015 not in the Motif Atlas
- Homologous match to HL_4V88_200
- Geometric discrepancy: 0.0937
- The information below is about HL_4V88_200
- Detailed Annotation
- Other HL
- Broad Annotation
- Other HL
- Motif group
- HL_53845.3
- Basepair signature
- cWW-tSH
- Number of instances in this motif group
- 9
Unit IDs
6I7O|1|2|C|569
6I7O|1|2|A|570
6I7O|1|2|G|571
6I7O|1|2|C|572
6I7O|1|2|C|573
6I7O|1|2|G|574
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain c
- 40S ribosomal protein S23-A
Coloring options: