HL_6I7O_020
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6I7O_020 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.1434
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6I7O|1|2|A|900
6I7O|1|2|G|901
6I7O|1|2|G|902
6I7O|1|2|U|903
6I7O|1|2|G|904
6I7O|1|2|A|905
6I7O|1|2|A|906
6I7O|1|2|A|907
6I7O|1|2|U|908
6I7O|1|2|U|909
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein S5
- Chain Z
- 40S ribosomal protein S14-B
- Chain e
- 40S ribosomal protein S26-B
- Chain l
- mRNA
- Chain m
- Transfer RNA; tRNA
Coloring options: