HL_6I7O_039
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GUAAUUC
- Length
- 7 nucleotides
- Bulged bases
- 6I7O|1|2b|U|159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6I7O_039 not in the Motif Atlas
- Geometric match to HL_4V88_188
- Geometric discrepancy: 0.2197
- The information below is about HL_4V88_188
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
6I7O|1|2b|G|154
6I7O|1|2b|U|155
6I7O|1|2b|A|156
6I7O|1|2b|A|157
6I7O|1|2b|U|158
6I7O|1|2b|U|159
6I7O|1|2b|C|160
Current chains
- Chain 2b
- 18S ribosomal RNA
Nearby chains
- Chain Tb
- 40S ribosomal protein S6-A
- Chain db
- 40S ribosomal protein S24-A
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