HL_6I7O_046
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 6I7O|1|2b|G|403
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6I7O_046 not in the Motif Atlas
- Geometric match to HL_4V88_195
- Geometric discrepancy: 0.1398
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6I7O|1|2b|C|393
6I7O|1|2b|C|394
6I7O|1|2b|U|395
6I7O|1|2b|G|396
6I7O|1|2b|A|397
6I7O|1|2b|G|398
6I7O|1|2b|A|399
6I7O|1|2b|A|400
6I7O|1|2b|A|401
6I7O|1|2b|C|402
6I7O|1|2b|G|403
6I7O|1|2b|G|404
Current chains
- Chain 2b
- 18S ribosomal RNA
Nearby chains
- Chain Sb
- 40S ribosomal protein S4-A
- Chain Tb
- 40S ribosomal protein S6-A
- Chain Vb
- 40S ribosomal protein S8-A
- Chain db
- 40S ribosomal protein S24-A
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