HL_6I7O_062

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_062 not in the Motif Atlas

Geometric match to HL_5J7L_004

Geometric discrepancy: 0.1153

The information below is about HL_5J7L_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6I7O|1|2b|C|1121
6I7O|1|2b|G|1122
6I7O|1|2b|C|1123
6I7O|1|2b|A|1124
6I7O|1|2b|A|1125
6I7O|1|2b|G|1126

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain XS

60S ribosomal protein L41-B

Chain XT

60S ribosomal protein L43-A

Chain YQ

Large subunit ribosomal RNA; LSU rRNA