HL_6I7O_080

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

6I7O|1|BQ|G|218, 6I7O|1|BQ|A|219, 6I7O|1|BQ|G|220

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_080 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.0973

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

6I7O|1|BQ|G|216
6I7O|1|BQ|U|217
6I7O|1|BQ|G|218
6I7O|1|BQ|A|219
6I7O|1|BQ|G|220
6I7O|1|BQ|A|221
6I7O|1|BQ|A|222
6I7O|1|BQ|U|223
6I7O|1|BQ|C|224

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AK

60S ribosomal protein L26-A

Chain BE

60S ribosomal protein L4-A

Chain BS

5.8S ribosomal RNA; 5.8S rRNA