HL_6I7O_082

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGUAAAUUCC

Length

10 nucleotides

Bulged bases

6I7O|1|BQ|G|304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_082 not in the Motif Atlas

Geometric match to HL_4QLM_002

Geometric discrepancy: 0.254

The information below is about HL_4QLM_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_77600.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6I7O|1|BQ|G|303
6I7O|1|BQ|G|304
6I7O|1|BQ|U|305
6I7O|1|BQ|A|306
6I7O|1|BQ|A|307
6I7O|1|BQ|A|308
6I7O|1|BQ|U|309
6I7O|1|BQ|U|310
6I7O|1|BQ|C|311
6I7O|1|BQ|C|312

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L36-A

Chain AP

60S ribosomal protein L42-A

Chain AQ

60S ribosomal protein L15-A

Chain AR

60S ribosomal protein L28