HL_6I7O_123

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6I7O|1|BQ|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_123 not in the Motif Atlas

Homologous match to HL_5TBW_050

Geometric discrepancy: 0.1378

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6I7O|1|BQ|U|2292
6I7O|1|BQ|C|2293
6I7O|1|BQ|U|2294
6I7O|1|BQ|A|2295
6I7O|1|BQ|A|2296
6I7O|1|BQ|U|2297
6I7O|1|BQ|U|2298
6I7O|1|BQ|A|2299
6I7O|1|BQ|G|2300

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AB

60S ribosomal protein L23-A