HL_6I7O_163

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

6I7O|1|YQ|U|545, 6I7O|1|YQ|G|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_163 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.3179

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6I7O|1|YQ|C|543
6I7O|1|YQ|C|544
6I7O|1|YQ|U|545
6I7O|1|YQ|C|546
6I7O|1|YQ|G|547
6I7O|1|YQ|G|548

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains