HL_6I7O_172

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6I7O|1|YQ|A|913, 6I7O|1|YQ|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_172 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.097

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6I7O|1|YQ|G|910
6I7O|1|YQ|C|911
6I7O|1|YQ|G|912
6I7O|1|YQ|A|913
6I7O|1|YQ|A|914
6I7O|1|YQ|A|915
6I7O|1|YQ|G|916
6I7O|1|YQ|A|917
6I7O|1|YQ|C|918

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XF

60S ribosomal protein L37-A

Chain XQ

60S ribosomal protein L15-A

Chain XW

60S ribosomal protein L2-A