HL_6I7O_175

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

6I7O|1|YQ|U|1081

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_175 not in the Motif Atlas

Homologous match to HL_8C3A_024

Geometric discrepancy: 0.1237

The information below is about HL_8C3A_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6I7O|1|YQ|C|1076
6I7O|1|YQ|U|1077
6I7O|1|YQ|U|1078
6I7O|1|YQ|A|1079
6I7O|1|YQ|A|1080
6I7O|1|YQ|U|1081
6I7O|1|YQ|U|1082
6I7O|1|YQ|G|1083

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XV

60S ribosomal protein L29

Chain YI

60S ribosomal protein L5

Chain YJ

60S ribosomal protein L21-A