HL_6I7O_180
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UUAUGAUG
- Length
- 8 nucleotides
- Bulged bases
- 6I7O|1|YQ|U|1348, 6I7O|1|YQ|A|1352, 6I7O|1|YQ|U|1353, 6I7O|1|YQ|G|1354, 6I7O|1|YQ|U|1356
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6I7O_180 not in the Motif Atlas
- Geometric match to HL_5TBW_022
- Geometric discrepancy: 0.3375
- The information below is about HL_5TBW_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6I7O|1|YQ|U|1347
6I7O|1|YQ|U|1348
6I7O|1|YQ|A|1352
6I7O|1|YQ|U|1353
6I7O|1|YQ|G|1354
6I7O|1|YQ|A|1355
6I7O|1|YQ|U|1356
6I7O|1|YQ|G|1357
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain YB
- 60S ribosomal protein L18-A
- Chain YE
- 60S ribosomal protein L4-A
- Chain YG
- 60S ribosomal protein L32
- Chain YM
- 60S ribosomal protein L6-A
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