HL_6I7O_200

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6I7O|1|YQ|A|2256

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_200 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.3369

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6I7O|1|YQ|G|2253
6I7O|1|YQ|U|2254
6I7O|1|YQ|A|2255
6I7O|1|YQ|A|2256
6I7O|1|YQ|C|2257
6I7O|1|YQ|U|2258
6I7O|1|YQ|A|2259
6I7O|1|YQ|U|2260
6I7O|1|YQ|G|2261
6I7O|1|YQ|A|2262
6I7O|1|YQ|C|2263

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain 2b

Small subunit ribosomal RNA; SSU rRNA

Chain gb

40S ribosomal protein S30-A

Chain nb

Transfer RNA; tRNA