HL_6I7O_200
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 6I7O|1|YQ|A|2256
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6I7O_200 not in the Motif Atlas
- Homologous match to HL_5TBW_049
- Geometric discrepancy: 0.3369
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6I7O|1|YQ|G|2253
6I7O|1|YQ|U|2254
6I7O|1|YQ|A|2255
6I7O|1|YQ|A|2256
6I7O|1|YQ|C|2257
6I7O|1|YQ|U|2258
6I7O|1|YQ|A|2259
6I7O|1|YQ|U|2260
6I7O|1|YQ|G|2261
6I7O|1|YQ|A|2262
6I7O|1|YQ|C|2263
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain 2b
- Small subunit ribosomal RNA; SSU rRNA
- Chain gb
- 40S ribosomal protein S30-A
- Chain nb
- Transfer RNA; tRNA
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