HL_6I7O_205

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_205 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3453

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6I7O|1|YQ|C|2568
6I7O|1|YQ|A|2569
6I7O|1|YQ|U|2570
6I7O|1|YQ|U|2571
6I7O|1|YQ|C|2572
6I7O|1|YQ|G|2573

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XN

60S ribosomal protein L27-A