HL_6I7O_207

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

6I7O|1|YQ|A|2637, 6I7O|1|YQ|C|2644

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_207 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.0998

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6I7O|1|YQ|U|2633
6I7O|1|YQ|U|2634
6I7O|1|YQ|A|2635
6I7O|1|YQ|A|2636
6I7O|1|YQ|A|2637
6I7O|1|YQ|C|2638
6I7O|1|YQ|G|2639
6I7O|1|YQ|A|2640
6I7O|1|YQ|U|2641
6I7O|1|YQ|A|2642
6I7O|1|YQ|A|2643
6I7O|1|YQ|C|2644
6I7O|1|YQ|G|2645

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XV

60S ribosomal protein L29

Chain YD

60S ribosomal protein L10

Chain YJ

60S ribosomal protein L21-A