HL_6I7O_217

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_217 not in the Motif Atlas

Geometric match to HL_1L9A_002

Geometric discrepancy: 0.1683

The information below is about HL_1L9A_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6I7O|1|YQ|C|3025
6I7O|1|YQ|G|3026
6I7O|1|YQ|A|3027
6I7O|1|YQ|G|3028
6I7O|1|YQ|A|3029
6I7O|1|YQ|G|3030

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XD

60S ribosomal protein L9-A

Chain XO

Ubiquitin-60S ribosomal protein L40