HL_6I7O_226
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 6I7O|1|YS|U|81, 6I7O|1|YS|C|84, 6I7O|1|YS|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6I7O_226 not in the Motif Atlas
- Homologous match to HL_8C3A_230
- Geometric discrepancy: 0.4028
- The information below is about HL_8C3A_230
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6I7O|1|YS|U|69
6I7O|1|YS|G|70
6I7O|1|YS|A|71
6I7O|1|YS|A|72
6I7O|1|YS|U|73
6I7O|1|YS|U|74
6I7O|1|YS|G|75
6I7O|1|YS|C|76
6I7O|1|YS|A|77
6I7O|1|YS|G|78
6I7O|1|YS|A|79
6I7O|1|YS|A|80
6I7O|1|YS|U|81
6I7O|1|YS|U|82
6I7O|1|YS|C|83
6I7O|1|YS|C|84
6I7O|1|YS|G|85
6I7O|1|YS|U|86
6I7O|1|YS|G|87
6I7O|1|YS|A|88
6I7O|1|YS|A|89
Current chains
- Chain YS
- 5.8S ribosomal RNA
Nearby chains
- Chain XK
- 60S ribosomal protein L26-A
- Chain XL
- 60S ribosomal protein L39
- Chain YP
- 60S ribosomal protein L35-A
- Chain YQ
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: