HL_6I7O_230
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GCUUUCACC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6I7O_230 not in the Motif Atlas
- Homologous match to HL_4V9Q_214
- Geometric discrepancy: 0.4198
- The information below is about HL_4V9Q_214
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 42
Unit IDs
6I7O|1|m|G|31
6I7O|1|m|C|32
6I7O|1|m|U|33
6I7O|1|m|U|34
6I7O|1|m|U|35
6I7O|1|m|C|36
6I7O|1|m|A|37
6I7O|1|m|C|38
6I7O|1|m|C|39
Current chains
- Chain m
- E-site tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- 40S ribosomal protein S5
- Chain L
- 40S ribosomal protein S28-A
- Chain Z
- 40S ribosomal protein S14-B
- Chain l
- mRNA
- Chain n
- Transfer RNA; tRNA
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