HL_6I7O_232

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

6I7O|1|mb|C|16, 6I7O|1|mb|G|19, 6I7O|1|mb|G|20, 6I7O|1|mb|U|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_232 not in the Motif Atlas

Geometric match to HL_5B63_003

Geometric discrepancy: 0.247

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

6I7O|1|mb|C|13
6I7O|1|mb|A|14
6I7O|1|mb|G|15
6I7O|1|mb|C|16
6I7O|1|mb|C|17
6I7O|1|mb|U|18|||A
6I7O|1|mb|G|19
6I7O|1|mb|G|20
6I7O|1|mb|U|21
6I7O|1|mb|A|22
6I7O|1|mb|G|23

Current chains

Chain mb

P/E hybrid tRNA

Nearby chains