HL_6I7O_236
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GCUACGAAC
- Length
- 9 nucleotides
- Bulged bases
- 6I7O|1|n|U|33
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6I7O_236 not in the Motif Atlas
- Homologous match to HL_7U2I_104
- Geometric discrepancy: 0.2122
- The information below is about HL_7U2I_104
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6I7O|1|n|G|31
6I7O|1|n|C|32
6I7O|1|n|U|33
6I7O|1|n|A|34
6I7O|1|n|C|35
6I7O|1|n|G|36
6I7O|1|n|A|37
6I7O|1|n|A|38
6I7O|1|n|C|39
Current chains
- Chain n
- P-site tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain F
- 40S ribosomal protein S16-A
- Chain l
- mRNA
- Chain m
- Transfer RNA; tRNA
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