HL_6I7O_240

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_240 not in the Motif Atlas

Homologous match to HL_4V90_034

Geometric discrepancy: 0.4365

The information below is about HL_4V90_034

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

6I7O|1|nb|G|53
6I7O|1|nb|U|54
6I7O|1|nb|U|55
6I7O|1|nb|C|56
6I7O|1|nb|G|57
6I7O|1|nb|A|58
6I7O|1|nb|U|59
6I7O|1|nb|U|60
6I7O|1|nb|C|61

Current chains

Chain nb

A/P hybrid tRNA

Nearby chains

Chain XG

60S ribosomal protein L11-B

Chain YD

60S ribosomal protein L10

Chain YQ

Large subunit ribosomal RNA; LSU rRNA