HL_6I7O_242

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUUUUUUAAUGA

Length

12 nucleotides

Bulged bases

6I7O|1|2b|U|1057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_242 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3545

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

6I7O|1|2b|U|1054
6I7O|1|2b|U|1055
6I7O|1|2b|U|1056
6I7O|1|2b|U|1057
6I7O|1|2b|U|1058
6I7O|1|2b|U|1059
6I7O|1|2b|U|1060
6I7O|1|2b|A|1061
6I7O|1|2b|A|1062
6I7O|1|2b|U|1063
6I7O|1|2b|G|1064
6I7O|1|2b|A|1065

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Gb

40S ribosomal protein S17-A

Chain Qb

40S ribosomal protein S1-A

Chain fb

40S ribosomal protein S27-A