HL_6I9R_019

3D structure

PDB id

6I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG

Length

4 nucleotides

Bulged bases

6I9R|1|A|A|2401

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I9R_019 not in the Motif Atlas

Geometric match to HL_5F9R_002

Geometric discrepancy: 0.1232

The information below is about HL_5F9R_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6I9R|1|A|C|2400
6I9R|1|A|A|2401
6I9R|1|A|A|2402
6I9R|1|A|G|2403

Current chains

Chain A

16S rRNA

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial