HL_6IP5_012

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCGCGCGG

Length

8 nucleotides

Bulged bases

6IP5|1|1A|G|642

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_012 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3788

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6IP5|1|1A|C|516
6IP5|1|1A|C|517
6IP5|1|1A|G|518
6IP5|1|1A|C|519
6IP5|1|1A|G|642
6IP5|1|1A|C|643
6IP5|1|1A|G|644
6IP5|1|1A|G|645

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2F

60S ribosomal protein L13