HL_6IP5_021
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCUCUCCAGUCCG
- Length
- 13 nucleotides
- Bulged bases
- 6IP5|1|1A|C|1437, 6IP5|1|1A|U|1438
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP5_021 not in the Motif Atlas
- Geometric match to HL_2Y8W_001
- Geometric discrepancy: 0.3539
- The information below is about HL_2Y8W_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40612.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 3
Unit IDs
6IP5|1|1A|C|1436
6IP5|1|1A|C|1437
6IP5|1|1A|U|1438
6IP5|1|1A|C|1439
6IP5|1|1A|U|1440
6IP5|1|1A|C|1441
6IP5|1|1A|C|1442
6IP5|1|1A|A|1443
6IP5|1|1A|G|1444
6IP5|1|1A|U|1445
6IP5|1|1A|C|1446
6IP5|1|1A|C|1447
6IP5|1|1A|G|1448
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1F
- 60S ribosomal protein L4
- Chain 2A
- 60S ribosomal protein L7
- Chain 2K
- 60S ribosomal protein L18
- Chain 2V
- 60S ribosomal protein L29
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