HL_6IP5_048
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGGUCGGUCGCGGCCGGCGCCUAGC
- Length
- 25 nucleotides
- Bulged bases
- 6IP5|1|1A|G|2903, 6IP5|1|1A|U|2904, 6IP5|1|1A|C|3584, 6IP5|1|1A|G|3592, 6IP5|1|1A|C|3593, 6IP5|1|1A|U|3595, 6IP5|1|1A|A|3596
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP5_048 not in the Motif Atlas
- Geometric match to HL_2Y8W_001
- Geometric discrepancy: 0.2192
- The information below is about HL_2Y8W_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40612.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 3
Unit IDs
6IP5|1|1A|G|2901
6IP5|1|1A|G|2902
6IP5|1|1A|G|2903
6IP5|1|1A|U|2904
6IP5|1|1A|C|2905
6IP5|1|1A|G|2906
6IP5|1|1A|G|2907
6IP5|1|1A|U|2908
6IP5|1|1A|C|2909
6IP5|1|1A|G|2910
6IP5|1|1A|C|3584
6IP5|1|1A|G|3585
6IP5|1|1A|G|3586
6IP5|1|1A|C|3587
6IP5|1|1A|C|3588
6IP5|1|1A|G|3589
6IP5|1|1A|G|3590
6IP5|1|1A|C|3591
6IP5|1|1A|G|3592
6IP5|1|1A|C|3593
6IP5|1|1A|C|3594
6IP5|1|1A|U|3595
6IP5|1|1A|A|3596
6IP5|1|1A|G|3597
6IP5|1|1A|C|3598
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2L
- 60S ribosomal protein L19
- Chain 2t
- 40S ribosomal protein S8
- Chain 2v
- 40S ribosomal protein S11
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