HL_6IP5_049

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUGC

Length

5 nucleotides

Bulged bases

6IP5|1|1A|G|3615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_049 not in the Motif Atlas

Homologous match to HL_8C3A_045

Geometric discrepancy: 0.5441

The information below is about HL_8C3A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6IP5|1|1A|G|3614
6IP5|1|1A|G|3615
6IP5|1|1A|U|3616
6IP5|1|1A|G|3617
6IP5|1|1A|C|3618

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2L

60S ribosomal protein L19

Chain 2Q

60S ribosomal protein L24

Chain 2m

Small subunit ribosomal RNA; SSU rRNA