HL_6IP5_076

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_076 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3116

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6IP5|1|1A|C|5021
6IP5|1|1A|U|5022
6IP5|1|1A|C|5023
6IP5|1|1A|C|5024
6IP5|1|1A|C|5025
6IP5|1|1A|U|5026
6IP5|1|1A|C|5027
6IP5|1|1A|G|5028

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2O

60S ribosomal protein L22

Chain 2t

40S ribosomal protein S8