HL_6IP5_088

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCCCCGUGG

Length

10 nucleotides

Bulged bases

6IP5|1|2m|C|325

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_088 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.2934

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

6IP5|1|2m|C|321
6IP5|1|2m|C|322
6IP5|1|2m|C|323
6IP5|1|2m|C|324
6IP5|1|2m|C|325
6IP5|1|2m|C|326
6IP5|1|2m|G|327
6IP5|1|2m|U|328
6IP5|1|2m|G|329
6IP5|1|2m|G|330

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2Q

60S ribosomal protein L24

Chain 3H

40S ribosomal protein S6