HL_6IP5_100
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP5_100 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.2265
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6IP5|1|2m|A|957
6IP5|1|2m|G|958
6IP5|1|2m|G|959
6IP5|1|2m|U|960
6IP5|1|2m|G|961
6IP5|1|2m|A|962
6IP5|1|2m|A|963
6IP5|1|2m|A|964
6IP5|1|2m|U|965
6IP5|1|2m|U|966
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2r
- 40S ribosomal protein S5
- Chain 3L
- 40S ribosomal protein S14
- Chain zu
- Transfer RNA; tRNA
- Chain zv
- mRNA
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