HL_6IP5_111

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_111 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2016

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6IP5|1|2m|C|1460
6IP5|1|2m|G|1461
6IP5|1|2m|U|1462
6IP5|1|2m|U|1463
6IP5|1|2m|C|1464
6IP5|1|2m|A|1465
6IP5|1|2m|G|1466

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2y

40S ribosomal protein S17

Chain 3C

40S ribosomal protein S26