HL_6IP5_125

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

6IP5|1|1A|A|4214, 6IP5|1|1A|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_125 not in the Motif Atlas

Homologous match to HL_8P9A_166

Geometric discrepancy: 0.1645

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6IP5|1|1A|U|4210
6IP5|1|1A|C|4211
6IP5|1|1A|A|4212
6IP5|1|1A|A|4213
6IP5|1|1A|A|4214
6IP5|1|1A|C|4215
6IP5|1|1A|G|4216
6IP5|1|1A|G|4217
6IP5|1|1A|U|4218
6IP5|1|1A|A|4219
6IP5|1|1A|A|4220
6IP5|1|1A|C|4221
6IP5|1|1A|G|4222

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2D

60S ribosomal protein L10-like

Chain 2N

60S ribosomal protein L21

Chain 2V

60S ribosomal protein L29