HL_6IP6_009
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 6IP6|1|1A|G|315
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP6_009 not in the Motif Atlas
- Geometric match to HL_4QLM_002
- Geometric discrepancy: 0.2318
- The information below is about HL_4QLM_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_00911.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
6IP6|1|1A|G|314
6IP6|1|1A|G|315
6IP6|1|1A|U|316
6IP6|1|1A|A|317
6IP6|1|1A|A|318
6IP6|1|1A|A|319
6IP6|1|1A|C|320
6IP6|1|1A|U|321
6IP6|1|1A|C|322
6IP6|1|1A|C|323
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2H
- 60S ribosomal protein L15
- Chain 2U
- 60S ribosomal protein L27a
- Chain 2c
- 60S ribosomal protein L36
- Chain 2i
- 60S ribosomal protein L36a
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