HL_6IP6_016

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAAGAG

Length

7 nucleotides

Bulged bases

6IP6|1|1A|A|1254, 6IP6|1|1A|G|1256

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_016 not in the Motif Atlas

Geometric match to HL_6N5P_002

Geometric discrepancy: 0.3849

The information below is about HL_6N5P_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

6IP6|1|1A|C|1252
6IP6|1|1A|G|1253
6IP6|1|1A|A|1254
6IP6|1|1A|A|1255
6IP6|1|1A|G|1256
6IP6|1|1A|A|1257
6IP6|1|1A|G|1258

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains