HL_6IP6_017

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6IP6|1|1A|C|1325

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_017 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1333

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6IP6|1|1A|U|1317
6IP6|1|1A|C|1318
6IP6|1|1A|U|1319
6IP6|1|1A|U|1320
6IP6|1|1A|G|1321
6IP6|1|1A|A|1322
6IP6|1|1A|A|1323
6IP6|1|1A|A|1324
6IP6|1|1A|C|1325
6IP6|1|1A|A|1326

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2U

60S ribosomal protein L27a

Chain 2Y

60S ribosomal protein L32