HL_6IP6_026

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6IP6|1|1A|C|1676, 6IP6|1|1A|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_026 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1049

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6IP6|1|1A|C|1675
6IP6|1|1A|C|1676
6IP6|1|1A|U|1677
6IP6|1|1A|C|1678
6IP6|1|1A|A|1679
6IP6|1|1A|G|1680

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2U

60S ribosomal protein L27a

Chain 2V

60S ribosomal protein L29

Chain 2i

60S ribosomal protein L36a