HL_6IP6_030
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- 6IP6|1|1A|A|1891, 6IP6|1|1A|A|1892
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP6_030 not in the Motif Atlas
- Homologous match to HL_8C3A_026
- Geometric discrepancy: 0.1705
- The information below is about HL_8C3A_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6IP6|1|1A|G|1886
6IP6|1|1A|G|1887
6IP6|1|1A|A|1888
6IP6|1|1A|U|1889
6IP6|1|1A|G|1890
6IP6|1|1A|A|1891
6IP6|1|1A|A|1892
6IP6|1|1A|C|1893
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 2A
- 60S ribosomal protein L7
- Chain 2Y
- 60S ribosomal protein L32
- Chain 2Z
- 60S ribosomal protein L35a
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