HL_6IP6_037

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GCCUCC

Length

6 nucleotides

Bulged bases

6IP6|1|1A|C|2488, 6IP6|1|1A|C|2489, 6IP6|1|1A|U|2490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_037 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3465

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6IP6|1|1A|G|2487
6IP6|1|1A|C|2488
6IP6|1|1A|C|2489
6IP6|1|1A|U|2490
6IP6|1|1A|C|2491
6IP6|1|1A|C|2492

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1C

5.8S ribosomal RNA; 5.8S rRNA