HL_6IP6_053

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGAGUAACUAUGACUC

Length

16 nucleotides

Bulged bases

6IP6|1|1A|A|3760, 6IP6|1|1A|A|3766

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_053 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.3034

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

6IP6|1|1A|G|3754
6IP6|1|1A|G|3755
6IP6|1|1A|A|3756
6IP6|1|1A|G|3757
6IP6|1|1A|U|3758
6IP6|1|1A|A|3759
6IP6|1|1A|A|3760
6IP6|1|1A|C|3761
6IP6|1|1A|U|3762
6IP6|1|1A|A|3763
6IP6|1|1A|U|3764
6IP6|1|1A|G|3765
6IP6|1|1A|A|3766
6IP6|1|1A|C|3767
6IP6|1|1A|U|3768
6IP6|1|1A|C|3769

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2m

Small subunit ribosomal RNA; SSU rRNA

Chain zy

Transfer RNA; tRNA