HL_6IP6_054
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UCUAAUUAG
- Length
- 9 nucleotides
- Bulged bases
- 6IP6|1|1A|A|3799, 6IP6|1|1A|U|3802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP6_054 not in the Motif Atlas
- Homologous match to HL_5TBW_050
- Geometric discrepancy: 0.194
- The information below is about HL_5TBW_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
6IP6|1|1A|U|3796
6IP6|1|1A|C|3797
6IP6|1|1A|U|3798
6IP6|1|1A|A|3799
6IP6|1|1A|A|3800
6IP6|1|1A|U|3801
6IP6|1|1A|U|3802
6IP6|1|1A|A|3803
6IP6|1|1A|G|3804
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2P
- 60S ribosomal protein L23
- Chain 2m
- Small subunit ribosomal RNA; SSU rRNA
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