HL_6IP6_067

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6IP6|1|1A|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_067 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.1635

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6IP6|1|1A|A|4474
6IP6|1|1A|G|4475
6IP6|1|1A|C|4476
6IP6|1|1A|A|4477
6IP6|1|1A|G|4478
6IP6|1|1A|A|4479
6IP6|1|1A|A|4480
6IP6|1|1A|U|4481

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2C

60S ribosomal protein L9

Chain 2g

Ubiquitin-60S ribosomal protein L40