HL_6IP6_090

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_090 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1738

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6IP6|1|2m|U|416
6IP6|1|2m|C|417
6IP6|1|2m|A|418
6IP6|1|2m|G|419
6IP6|1|2m|G|420
6IP6|1|2m|G|421

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2v

40S ribosomal protein S11

Chain 3G

40S ribosomal protein S2

Chain 3I

40S ribosomal protein S9

Chain 3M

40S ribosomal protein S15a