HL_6IP6_093

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGACCCGG

Length

8 nucleotides

Bulged bases

6IP6|1|2m|A|500, 6IP6|1|2m|C|502, 6IP6|1|2m|C|503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_093 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3648

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6IP6|1|2m|C|498
6IP6|1|2m|G|499
6IP6|1|2m|A|500
6IP6|1|2m|C|501
6IP6|1|2m|C|502
6IP6|1|2m|C|503
6IP6|1|2m|G|504
6IP6|1|2m|G|505

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 3N

40S ribosomal protein S24