HL_6IP6_098

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

6IP6|1|2m|G|836, 6IP6|1|2m|G|838, 6IP6|1|2m|C|840

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_098 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.306

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

6IP6|1|2m|C|833
6IP6|1|2m|C|834
6IP6|1|2m|C|835
6IP6|1|2m|G|836
6IP6|1|2m|A|837
6IP6|1|2m|G|838
6IP6|1|2m|C|839
6IP6|1|2m|C|840
6IP6|1|2m|G|841

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 3I

40S ribosomal protein S9

Chain 3N

40S ribosomal protein S24