HL_6IP6_099

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCG

Length

18 nucleotides

Bulged bases

6IP6|1|2m|G|891, 6IP6|1|2m|G|894, 6IP6|1|2m|U|896, 6IP6|1|2m|U|899

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_099 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3928

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6IP6|1|2m|C|884
6IP6|1|2m|U|885
6IP6|1|2m|A|886
6IP6|1|2m|U|887
6IP6|1|2m|U|888
6IP6|1|2m|U|889
6IP6|1|2m|U|890
6IP6|1|2m|G|891
6IP6|1|2m|U|892
6IP6|1|2m|U|893
6IP6|1|2m|G|894
6IP6|1|2m|G|895
6IP6|1|2m|U|896
6IP6|1|2m|U|897
6IP6|1|2m|U|898
6IP6|1|2m|U|899
6IP6|1|2m|C|900
6IP6|1|2m|G|901

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2v

40S ribosomal protein S11

Chain 3H

40S ribosomal protein S6